Incorrect ID key mapping with -sim command


Seems like issue 17541 still isn't completly resolved in version 1.09 for Windows.
I use this command to read in a created sim-file:
fastlmmc -bfile data.fastlmm -pheno data.pheno -sim data.sim
I get this error message:
Fatal Error : Cannot create column major array from Vector and Mapping. kernelColumns contains [0] copies of mapping key [1 123] (epected 1 copy).
Has http://fastlmm.codeplex.com/SourceControl/changeset/changes/87382 not yet been implemented in the latest version?


bobd00 wrote Jul 14, 2012 at 5:49 AM

As far as I can tell the change list was checked-in and integrated in build v1.07.

Although they are simplistic, my test cases for this bug still appear run correctly. Can you please zip up your specific input files and a batch file to run that demonstrates the problem and attach it to this bug so I can repro it here? If they are too big, send me an email and we can figure out another way to get enough information to repro the issue here.


wrote Feb 13, 2013 at 10:40 PM

mihuzx wrote Nov 24, 2013 at 11:25 PM


Have the problem been solved?
but I came aross the same problem.Would you please give any suggestion about this problem. how can I fix my sim-file and make it work.
Appreciate your quick reply.

mihuzx wrote Nov 25, 2013 at 1:01 AM

The problem solved. I read the user-manual of version2.07 and found the tile row also need family ID and individual ID separated by a space which is not explained in the version1.09.
thanks all the same

bobd00 wrote Nov 25, 2013 at 6:15 AM

Glad your were able to resolve the problem using the new docs.