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Incorrect ID key mapping with -sim command

description

Seems like issue 17541 still isn't completly resolved in version 1.09 for Windows.
 
I use this command to read in a created sim-file:
fastlmmc -bfile data.fastlmm -pheno data.pheno -sim data.sim
 
I get this error message:
Fatal Error : Cannot create column major array from Vector and Mapping. kernelColumns contains [0] copies of mapping key [1 123] (epected 1 copy).
 
Has http://fastlmm.codeplex.com/SourceControl/changeset/changes/87382 not yet been implemented in the latest version?

comments

bobd00 wrote Jul 14, 2012 at 5:49 AM

As far as I can tell the change list was checked-in and integrated in build v1.07.

Although they are simplistic, my test cases for this bug still appear run correctly. Can you please zip up your specific input files and a batch file to run that demonstrates the problem and attach it to this bug so I can repro it here? If they are too big, send me an email and we can figure out another way to get enough information to repro the issue here.

thanks
-bobd-

wrote Feb 13, 2013 at 10:40 PM

mihuzx wrote Nov 24, 2013 at 11:25 PM

hi,

Have the problem been solved?
but I came aross the same problem.Would you please give any suggestion about this problem. how can I fix my sim-file and make it work.
Appreciate your quick reply.

mihuzx wrote Nov 25, 2013 at 1:01 AM

hi,
The problem solved. I read the user-manual of version2.07 and found the tile row also need family ID and individual ID separated by a space which is not explained in the version1.09.
thanks all the same

bobd00 wrote Nov 25, 2013 at 6:15 AM

Glad your were able to resolve the problem using the new docs.

best,
-bobd-